Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr075580811955808138+
precursorchr075580811755808237+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGACAGAAGAGAGUGAGCAC
>precursor_sequence
ACUGACAGAAGAGAGUGAGCACACAGCGGGCAGACUGCAUCGAUCUGAACCGAGACGACGCAAGUAGGAAUGAUGAUGAUGAUGCAGCUGCUGCUG
CGUGCUCACUUCUCUCUCUGUCAGA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.005G1206001.021.56120-11005-1024

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.007G2102001.020.20220-11210-1229

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.007G2102001.020.20220-11213-1232

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.005G1206001.021.56120-11185-1204

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.002G2478001.018.26520-11416-1435

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.002G2579001.012.37620-11701-1720

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.007G1935001.018.3520-11653-1672

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.004G0369001.022.45720-11765-1784

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.007G2102001.020.20220-11310-1329

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.003G4066001.020.88920-12361-2380

CACGAGUGAGAGAAGACAGU
||||||*|||||||||||||
GUGCUCUCUCUCUUCUGUCA

Sobic.002G3122002.014.39920-1910-929

CACGAGUGAGAGAAGACAGU
*|||||*|||||||||||||
AUGCUCUCUCUCUUCUGUCA

Sobic.002G3123002.015.2620-1832-851

CACGAGUGAGAGAAGACAGU
*|||||*|||||||||||||
AUGCUCUCUCUCUUCUGUCA

Sobic.003G2989003.016.35520-11353-1372

CACGAGUGAGAGAAGACAGU
*||||||=||||||||=|||
AUGCUCAUUCUCUUCUUUCA

Sobic.003G2989003.016.35520-11401-1420

CACGAGUGAGAGAAGACAGU
*||||||=||||||||=|||
AUGCUCAUUCUCUUCUUUCA

Sobic.002G0983003.023.80820-11389-1408

CACGAGUGAGAGAAGACAGU
=*||||||*|||||||||||
UGGCUCACCCUCUUCUGUCA

Sobic.010G2098003.017.30820-11451-1470

CACGAGUGAGAGAAGACAGU
*|||*||=||||||=|||||
CUGCCCAUUCUCUUUUGUCA

Sobic.001G4088003.019.2820-1786-805

CACGAGUGAGAGAAGACAGU
*|*||||=|||=||||||||
CUCCUCAUUCUUUUCUGUCA

Sobic.008G0535002.511.12120-13057-3076

CACGAGUGAGAGAAGACAGU
|||||=|*||||*|||||||
GUGCUUAAUCUCCUCUGUCA

Sobic.010G2088003.018.49620-177-96

CACGAGUGAGAGAAGACAGU
|||=||==|=*|||||||||
GUGUUCGUUUGCUUCUGUCA

Sobic.010G2088003.018.49620-177-96

CACGAGUGAGAGAAGACAGU
|||=||==|=*|||||||||
GUGUUCGUUUGCUUCUGUCA

Sobic.004G0506003.018.9820-1128-147

CACGAGUGAGAGAAGACAGU
|*||||*=||||||=|||||
GAGCUCUUUCUCUUUUGUCA

Sobic.002G3055003.017.56720-11390-1409

CACGAGUGAGAGAAGACAGU
|||=|||=|*|*||||||||
GUGUUCAUUGUGUUCUGUCA

Sobic.010G0007003.020.04619-11426-1445

ACGAGUGAGAGA-AGACAGU
||||||||||=|*|||||=|
UGCUCACUCUUUGUCUGUUA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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