Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr027175602371756043-
precursorchr027175592071756103-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CUCAGGAGAGAUGACACCGAC
>precursor_sequence
GAUAGGACAUAGGAGGCGAGAGGGACGACGAGCCGUUGGUUUGUGGGUGUGCGUCCUAUGCUCAGGAGAGAUGACACCGACGUCGGACGGACCGGU
CGAUCCGCGCCGUGUCUGUCCGUCCGAAGUGGGUGUCAUCUCGCCUGAAGCAUAGGACUUACCAGCCCAGUACAUCUCCCUGUUUUCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G3413002.515.94220-11486-1505

AGCCACAGUAGAGAGGACUC
|=|||||*=|=|||||||||
UUGGUGUAGUUUCUCCUGAG

Sobic.002G0718003.023.18520-1811-830

AGCCACAGUAGAGAGGACUC
**|*||||||||||||||||
GGGCUGUCAUCUCUCCUGAG

Sobic.010G1018003.020.75220-12169-2188

AGCCACAGUAGAGAGGACUC
*=|||||||||*|||=||||
GUGGUGUCAUCACUCUUGAG

Sobic.002G1591003.019.66620-1633-652

AGCCACAGUAGAGAGGACUC
|||||||==|=*=|||||||
UCGGUGUUGUUAUUCCUGAG

Sobic.006G1484003.022.29720-12177-2196

AGCCACAGUAGAGAGGACUC
|=|||||=|||*=||=||||
UUGGUGUUAUCCUUCUUGAG

Sobic.003G2879003.024.29120-1746-765

AGCCACAGUAGAGAGGACUC
||*|||||*||||||||||=
UCCGUGUCUUCUCUCCUGAU

Sobic.003G2879003.024.29120-1746-765

AGCCACAGUAGAGAGGACUC
||*|||||*||||||||||=
UCCGUGUCUUCUCUCCUGAU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24004.351
seedling_root_AR2400_ave4.510
seedling_shoot_AR2400_ave4.428
shoot_tip_38_AR24004.234
internode_61DAP_AR2400_T4.607
internode_70DAP_AR2400_M4.694
internode_61DAP_AR2400_B4.025
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas4.553
seedling_root_Atlas4.359
seedling_shoot_Atlas_ave3.713
shoot_tip_38_Atlas4.817
internode_61DAP_Atlas_T4.13
internode_70DAP_Atlas_M4.438
internode_61DAP_Atlas_B4.209
pith_70DAP_Atlas_T4.817
pith_70DAP_Atlas_M4.139
pith_70DAP_Atlas_B4.053
pith_60DAP_Atlas_ave4.222
rind_70DAP_Atlas_T3.991
rind_70DAP_Atlas_M4.267
rind_70DAP_Atlas_B4.315
rind_60DAP_Atlas_ave4.083
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont4.912
seedling_root_Fremont_ave3.997
seedling_shoot_Fremont_ave4.218
shoot_tip_38_Fremont4.55
internode_61DAP_Fremont_T4.22
internode_70DAP_Fremont_M4.072
internode_61DAP_Fremont_B3.61
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526114.279
seedling_root_PI1526114.592
seedling_shoot_PI152611_ave4.114
shoot_tip_38_PI1526113.666
internode_61DAP_PI152611_T3.993
internode_70DAP_PI152611_M4.58
internode_61DAP_PI152611_B4.822
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552304.701
seedling_root_PI4552304.92
seedling_shoot_PI455230_ave4.440
shoot_tip_38DAP_ PI4552304.682
internode_61DAP_PI4552305.085
internode_70DAP_PI455230_M4.339
internode_61DAP_PI455230_B4.599
pith_70DAP_PI455230_M4.031
pith_70DAP_PI455230_B5.353
pith_60DAP_PI455230_ave4.523
rind_70DAP_PI455230_T6.41
rind_70DAP_PI455230_M3.877
rind_70DAP_PI455230_B4.334
rind_60DAP_PI455230_ave4.340
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1594.594
seedling_root_R1594.002
seedling_shoot_R159_ave4.563
shoot_tip_38DAP_ R1595.15
internode_61DAP_R159_T5.032
internode_61DAP_R159_B4.704
pith_70DAP_R159_T4.115
pith_70DAP_R159_B4.374
pith_60DAP_R1593.885
rind_70DAP_R159_T4.236
rind_70DAP_R159_B4.757
rind_60DAP_R1594.805

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