Sorghum Functional Genomics Database
Ubiquitins
Ubiquitins have been identified through hidden Markov model search captured from the ubiquitin and ubiquitin-like conjugation database. There are 35 subfamilies with 1,846 members.
E1
E1
E2
UBC UEV ATG
E3
HECT RING U-box
PHD UBR-box N-domain
DCUN1 Cullin F-box
SKP1 BTB_3-box BTB_Other
DWD DDB1
DUB
UCH USP OTU
Josephin JAMM ULP
UBD
CUE UBA UIM
ZnF_UBP UBD_UBC Beta_Prp
ULP
SUMO NEDD8 UBQ_PIM
UBQ_Other UBX
Classification Rules
FamilyMain domainFamilyMain domain
Thif(19)PF00899BTB_3-box(180)PF00917, PF00651
UBC(32)PF00179DDB1(1)PF10433, PF03178
UEV(44)PF00179DWD(266)PF00400
HECT(11)PF00632UCH(7)PF01088
RING(561)PF13639USP(45)PF00443
U-box(176)PF04564, PF13639OTU(25)PF02338
UBR-box(6)PF02207Josephin(2)PF02099
Cullin(9)PF00888, PF10557JAMM(16)PF01398
F-box(693)PF00646, PF12937ULP(75)PF02902
SKP1(15)PF03931, PF01466N-domain(1)PF02617
SOCS/VHL/BC-box(3)PF03514, PF02519

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