Sub-networks comparison between cotton species among multiple conditions is useful for finding conservation and distinction of evolution. Here we supply comparison function between ortholog genes in G. arboreum and G. hirsutum. Custom comparison has been developed for sub-networks of customized gene pairs analysis.

This tool overlays gene expression view onto co-expression network search of a single gene or a list of genes. Tissue-preferential analysis and the stress differential analysis are two main characteristics of the co-expression network analysis. After selecting different conditions, gene expression changes will be clearly displayed

A list of genes are required here for functional modules enrichment, including co-expression functional module, miRNA-targets module and text-mining module. According to statistical test method and multi-test adjustment method, significant enrichment functional modules will be listed, together with annotation, overlap genes, links of functional module details.

There are over 900 plant cis-elements with article annotation collected. A list of genes is only required for enrichment analysis. In addition, custom motif analysis are supported by inputting the novel motif sequence.

Gene details search for a single gene or list of genes, keywords search for functional modules(coexpression, miRNA-target and text-mining modules), ortholog search for cotton species are supported.