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Annotation of co-expression genes

Gh_D06G0922's details annotation

1.Network

Network CategoryDirect Relationship Components
Coexpression PositiveGh_A12G1833  Gh_A12G0398  Gh_A02G1742  Gh_D02G2345  Gh_D04G1370  Gh_D12G1828  Gh_A04G0670  Gh_D11G2834  Gh_A05G1363  Gh_D12G0270  ...

Top300 PCC genelist          MR network genelist
Coexpression NegativeGh_A03G0636  Gh_A08G1117  Gh_D03G0219  ...

Top300 PCC genelist          MR network genelist
Predict protein-portein interactionGh_D06G1517  Gh_D07G0053  Gh_A09G0653  Gh_A06G1872  Gh_A05G1293  Gh_D05G0536  Gh_A03G0373  Gh_D05G1138  Gh_A05G0482  Gh_A09G0738  details...
miRNA-targets relationship

Somatic Embryo Network: A custom network

2.Functional module

MethodModule IDFunction Annotation

3.Cis-elements

Details in 3kb promoter region

4.Expression profilings


UCSC genome browser

5.Location

Chromosome: D06
Strand: -

RegionStartEnd
gene1856846918571688
mRNA1856846918571688
CDS1857165918571688
CDS1857129118571462
CDS1857062118570703
CDS1857035618570415
CDS1856998318570091
CDS1856982418569876
CDS1856967018569750
CDS1856947618569588
CDS1856846918568565

6.Annotation

Blast result AT4G33000: 3.00E-77
Annotation: Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. In the shoot SCABP recruits the protein kinase SOS2 to the plasma membrane. SCABP is partially redundant with SOS3 but neither protein can fully complement the loss of the other protein.

7.Ortholog in cotton

VarietyGene IDAlignment Start(D2-A2)Alignment End(D2-A2)Blast Evalue
G. arboreumCotton_A_348411-1238-2652E-110
G. raimondiiGorai.010G101400.11-1238-2381.00E-116
G. raimondiiGorai.009G045600.21-1243-2443.00E-82

8.Gene family

CategoryFamily

9.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13833.1EF-hand_890134
PF13499.1EF-hand_7150217

10.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Alzheimer's diseasePPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko05010K06268
HTLV-I infectionPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko05166K06268
Oocyte meiosisPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04114K06268
TuberculosisPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko05152K06268
MAPK signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04010K06268
Wnt signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04310K06268
cGMP-PKG signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04022K06268
Oxytocin signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04921K06268
Glucagon signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04922K06268
Amyotrophic lateral sclerosis (ALS)PPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko05014K06268
Calcium signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04020K06268
Amphetamine addictionPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko05031K06268
VEGF signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04370K06268
Long-term potentiationPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04720K06268
Axon guidancePPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04360K06268
Glutamatergic synapsePPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04724K06268
T cell receptor signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04660K06268
ApoptosisPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04210K06268
Osteoclast differentiationPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04380K06268
B cell receptor signaling pathwayPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04662K06268
Natural killer cell mediated cytotoxicityPPP3R; serine/threonine-protein phosphatase 2B regulatory subunitko04650K06268

11.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding

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