Detail information of pvu-miR482-5p

Basic Info
Non-coding RNA IDpvu-miR482-5p
SpeciesPhaseolus vulgaris
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length22
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[pvu-MIR482]

GGGAUCCGGAGAUUGGAGCAAUCAGAAUUUGUGGGAAUGGGCUGAUUGGGAAGCAAUGUGUGCUGGUGCAAUGCAUUUAAUUUCUUCCCAAUUCCGCCCAUUCCUAUGAUCUCUGAUGAUUCUUUCCUUUCCU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[pvu-miR482-5p]

GGAAUGGGCUGAUUGGGAAGCA

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
GW911065
 ncRNA:20GAAGGGUUAGUCGGGUAAGG1
   ||||||*||=||||||*||| 
 targets:93CUUCCCUAUUAGCCCAAUCC112
3similar to UniRef100_A7QMI6 Cluster: Chromosome chr19 scaffold_126, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_126, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)coding genepsRNATarget[Detail]
TC40503
 ncRNA:22ACGAAGGGUUAGUCGGGUAAGG1
   |*|||=|||||*|||===|||| 
 targets:130UUCUUUCCAAUAAGCUUGUUCC151
3similar to UniRef100_A7P2D1 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)coding genepsRNATarget[Detail]
TC45405
 ncRNA:22ACGAAGGGUUAGUCGGGUAAGG1
   |*||||||||*|=|||=||||| 
 targets:216UUCUUCCCAAACGGCCUAUUCC237
2weakly similar to UniRef100_Q9FZ54 Cluster: F5I1.4 protein; n=1; Arabidopsis thaliana|Rep: F5I1.4 protein - Arabidopsis thaliana (Mouse-ear cress), partial (20%)coding genepsRNATarget[Detail]
 

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