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Detail information of pvu-miR2119

Basic Info

Non-coding RNA ID

pvu-miR2119

Species

Phaseolus vulgaris

class

miRNA

Chromosome

Start Site (precursors if it is microRNA)

End Site (precursors if it is microRNA)

Strand

Length

Assembly

Annotation

Source Gene Model

Reference

PMID: "24275495"

miRBase: annotating high confidence microRNAs using deep sequencing data

Kozomara, A. and Griffiths-Jones, S.

Nucleic acids research, 42, D68-73.(2014)

Sequence and structure Info

Stem-loop sequence[pvu-MIR2119]

AGCAAUGGUGUUAUUUUUAUACUUUAUUUUCUAUGCUUUUCCUCUACAACUCUCUUUUAUUUUGGAUAAAUGAAGUGGAUUUCUACUCUUUGAUUGGAGAAAAAAAGUGGAUUUCUAUUUUUUUCAAUCAAAGGGAGUUGUAGGGGAA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[pvu-miR2119]

UCAAAGGGAGUUGUAGGGGAA

Targets Info

target name

Alignment

Expection

Target Description

Target type

Method

FE898874

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	142	UCCUCUUCAACUCCCUUUGC	161

2.5

similar to UniRef100_Q84V97 Cluster: Alcohol dehydrogenase 1; n=1; Lotus corniculatus|Rep: Alcohol dehydrogenase 1 - Lotus corniculatus (Bird's-foot trefoil), partial (52%)

coding gene

psRNATarget[Detail]

FE899130

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	138	UCCUCUUCAACUCCCUUUGC	157

2.5

similar to UniRef100_Q8LJR2 Cluster: Alcohol dehydrogenase 1; n=1; Glycine max|Rep: Alcohol dehydrogenase 1 - Glycine max (Soybean), partial (57%)

coding gene

psRNATarget[Detail]

FE899943

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	166	UCCUCUUCAACUCCCUUUGC	185

2.5

similar to UniRef100_Q8LJR2 Cluster: Alcohol dehydrogenase 1; n=1; Glycine max|Rep: Alcohol dehydrogenase 1 - Glycine max (Soybean), partial (49%)

coding gene

psRNATarget[Detail]

FE900020

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	170	UCCUCUUCAACUCCCUUUGC	189

2.5

similar to UniRef100_Q8LJR2 Cluster: Alcohol dehydrogenase 1; n=1; Glycine max|Rep: Alcohol dehydrogenase 1 - Glycine max (Soybean), partial (48%)

coding gene

psRNATarget[Detail]

FG229084

ncRNA:	21	AAGGGGAUGUUGAGGGAAACU	1
		\|*\|\|\|\|\|=\|\|\|=\|\|\|=\|\|\|\|=
targets:	53	UGCCCCUGCAAUUCCUUUUGG	73

weakly similar to UniRef100_A7P285 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (32%)

coding gene

psRNATarget[Detail]

NP7938869

ncRNA:	21	AAGGGGAUGUUGAGGGAAACU	1
		\|\|\|\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|
targets:	1724	UUCCCUUCCAUCUCCUUUUGA	1744

GB|AF149280.1|AAD37430.1 peroxidase 5 precursor;secretory peroxidase

coding gene

psRNATarget[Detail]

TC32683

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|=\|\|\|\|**\|\|\|\|\|\|\|\|\|\|\|\|
targets:	725	UUCCCUCAAACUCCCUUUGA	744

2.5

homologue to UniRef100_A5A8C1 Cluster: C2-H2 zinc finger protein; n=1; Arabidopsis thaliana|Rep: C2-H2 zinc finger protein - Arabidopsis thaliana (Mouse-ear cress), partial (34%)

coding gene

psRNATarget[Detail]

TC33800

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|=\|\|\|\|\|
targets:	335	UCCUCUACACCUCUCUUUGC	354

UniRef100_Q43016 Cluster: Alcohol dehydrogenase-1F; n=1; Phaseolus acutifolius|Rep: Alcohol dehydrogenase-1F - Phaseolus acutifolius (Tepary bean), complete

coding gene

psRNATarget[Detail]

TC34403

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	170	UCCUCUUCAACUCCCUUUGC	189

2.5

homologue to UniRef100_Q8LJR2 Cluster: Alcohol dehydrogenase 1; n=1; Glycine max|Rep: Alcohol dehydrogenase 1 - Glycine max (Soybean), complete

coding gene

psRNATarget[Detail]

TC34561

ncRNA:	21	AAGGGGAUGUUGAGGGAAACU	1
		\|\|\|*=\|\|\|\|\|\|\|\|=\|\|\|\|\|\|=
targets:	746	UUCGUCUACAACUUCCUUUGG	766

2.5

similar to UniRef100_A5AMZ9 Cluster: Peptidyl-prolyl cis-trans isomerase; n=2; Vitis vinifera|Rep: Peptidyl-prolyl cis-trans isomerase - Vitis vinifera (Grape), partial (20%)

coding gene

psRNATarget[Detail]

TC35484

ncRNA:	21	AAGGGGAUGUUGAGGGAAACU	1
		\|\|\|\|\|=\|=\|\|\|\|\|\|\|=\|\|\|*\|
targets:	958	UUCCCUUGCAACUCCUUUUUA	978

similar to UniRef100_A7QKW3 Cluster: Chromosome chr8 scaffold_115, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_115, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

coding gene

psRNATarget[Detail]

TC36369

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	170	UCCUCUUCAACUCCCUUUGC	189

2.5

homologue to UniRef100_Q8LJR2 Cluster: Alcohol dehydrogenase 1; n=1; Glycine max|Rep: Alcohol dehydrogenase 1 - Glycine max (Soybean), partial (53%)

coding gene

psRNATarget[Detail]

TC40285

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	170	UCCUCUACACCUCCCUUUGC	189

2.5

homologue to UniRef100_Q84V97 Cluster: Alcohol dehydrogenase 1; n=1; Lotus corniculatus|Rep: Alcohol dehydrogenase 1 - Lotus corniculatus (Bird's-foot trefoil), partial (53%)

coding gene

psRNATarget[Detail]

TC40381

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|=\|\|*=\|\|\|\|\|\|\|=\|\|\|\|\|
targets:	506	UCUCCGGCAACUCCUUUUGA	525

2.5

similar to UniRef100_A7QC07 Cluster: Chromosome chr10 scaffold_76, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_76, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)

coding gene

psRNATarget[Detail]

TC41400

ncRNA:	20	AGGGGAUGUUGAGGGAAACU	1
		\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	123	UCCUCUACACCUCCCUUUGC	142

2.5

homologue to UniRef100_Q84V97 Cluster: Alcohol dehydrogenase 1; n=1; Lotus corniculatus|Rep: Alcohol dehydrogenase 1 - Lotus corniculatus (Bird's-foot trefoil), partial (69%)

coding gene

psRNATarget[Detail]