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Detail information of pvu-miR166a

Basic Info

Non-coding RNA ID

pvu-miR166a

Species

Phaseolus vulgaris

class

miRNA

Chromosome

Start Site (precursors if it is microRNA)

End Site (precursors if it is microRNA)

Strand

Length

Assembly

Annotation

Source Gene Model

Reference

PMID: "24275495"

miRBase: annotating high confidence microRNAs using deep sequencing data

Kozomara, A. and Griffiths-Jones, S.

Nucleic acids research, 42, D68-73.(2014)

Sequence and structure Info

Stem-loop sequence[pvu-MIR166a]

AUCAGUUUCUACUUUCUAAUCAUCAACUUCUUCAAACACAUCAUAUGAAUAUAGCUACCUAGGUGCUGUUUUCUUUUCCAACUUCCUCAUAUCUUGUUCAUUCCUUGCAAAGGUGAGGUUGAGAGGAAUGUUGUCUGGCUCGAGGUCAUGGAGGAGGAGAGUUCUCAGAUAAACUCUUUCACCCAAAGUUUCCAAUGGAAAUUUACCCUCUAACACCAAAAUGAUUCUCGGACCAGGCUUCAUUCCCCCCACCCAACUUUUGCUAUUUUCUUUCUCGUAAUCUUCAUAUUUUGCAUGCCCCCAUGCUUGUUUUUGCAGGAUCAGAAUUUUCAACUCACUACCCAUCUUCUUUUGUUUUACCUGUAAAUAUCUUUAUAAAGGCCGGUGAAAAUUAUAGGGAAGGCAACUUCAUAAUUUACUUGGGAAAAAGGCUUGCCAUCAUUUUCAUCAACAUCUGAAUGAAUGUACUUCAGUGAAAUGACAGUGACGAGUGUUGAAGGCAUGCACUCACUAGCCGCUGAAAGUUGCUGAGAAGCAUAUGCUAAAUGUGAAAGAGUAAUGAAUGAAAGAAGAGAAGAGAAGAGAAGUGCUGGAACAGUUAACGAGAAGAAGUGAGAAUCAGGAGAAGCUAGCAAGCUAGGGAUUCUAUGUGUCUGAGUCUGUGACUCUU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[pvu-miR166a]

UCGGACCAGGCUUCAUUCCCC

Targets Info

target name

Alignment

Expection

Target Description

Target type

Method

TC38817

ncRNA:	20	CCCUUACUUCGGACCAGGCU	1
		\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|
targets:	469	GGGAUUCAAGCCGGGUCCGA	488

similar to UniRef100_Q9ZP40 Cluster: Plastoglobulin-1, chloroplast precursor; n=1; Pisum sativum|Rep: Plastoglobulin-1, chloroplast precursor - Pisum sativum (Garden pea), partial (56%)

coding gene

psRNATarget[Detail]

TC43711

ncRNA:	20	CCCUUACUUCGGACCAGGCU	1
		\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|
targets:	402	GGGAUUCAAGCCGGGUCCGA	421

similar to UniRef100_Q9ZP40 Cluster: Plastoglobulin-1, chloroplast precursor; n=1; Pisum sativum|Rep: Plastoglobulin-1, chloroplast precursor - Pisum sativum (Garden pea), partial (70%)

coding gene

psRNATarget[Detail]