Detail information of pvu-miR159a.2

Basic Info
Non-coding RNA IDpvu-miR159a.2
SpeciesPhaseolus vulgaris
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[pvu-MIR159a]

GUGGAGCUCCUUGAAGUCCAAUUGAGGAUCUUACUGGGUGGAUUGAGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAGCAUGUUUUGUGGUAGUCUUGUGGCUUCCAUAUCUGGGGAGCUUCAUCUGCCUCUAUAGUAUCAUCCUUCUUUGGAUUGAAGGGAGCUCUAC

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[pvu-miR159a.2]

CUUCCAUAUCUGGGGAGCUUC

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
TC44204
 ncRNA:20UUCGAGGGGUCUAUACCUUC1
   *||*|||=|||||||||||| 
 targets:453CAGAUCCUCAGAUAUGGAAG472
2.5similar to UniRef100_O24457 Cluster: Pyruvate dehydrogenase E1 alpha subunit; n=1; Arabidopsis thaliana|Rep: Pyruvate dehydrogenase E1 alpha subunit - Arabidopsis thaliana (Mouse-ear cress), partial (71%)coding genepsRNATarget[Detail]
 

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