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Detail information of pvu-miR1514a

Basic Info

Non-coding RNA ID

pvu-miR1514a

Species

Phaseolus vulgaris

class

miRNA

Chromosome

Start Site (precursors if it is microRNA)

End Site (precursors if it is microRNA)

Strand

Length

Assembly

Annotation

Source Gene Model

Reference

PMID: "24275495"

miRBase: annotating high confidence microRNAs using deep sequencing data

Kozomara, A. and Griffiths-Jones, S.

Nucleic acids research, 42, D68-73.(2014)

Sequence and structure Info

Stem-loop sequence[pvu-MIR1514a]

AUUGAAGAACGCCUUGCCUACCUUCUCACUGCAUCCUUUUGAAUGGAAACAGGGCUUUCCUGUUUUCAUUUUGAAAAUAGGCAUUGCAUUACAUUUCGAUGCGUCUUCCAAUUCCAAUGCCUAUUUUAAGAUGAAAACAAGGAUACACUGUUUUUGUUUGAAACUGUUGUGAAGGAAGAUAAGACUCCCGAGUUCUUCAAUU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[pvu-miR1514a]

UUCAUUUUGAAAAUAGGCAUUG

Targets Info

target name

Alignment

Expection

Target Description

Target type

Method

CB543441

ncRNA:	22	GUUACGGAUAAAAGUUUUACUU	1
		\|\|\|\|==\|\|\|\|\|\|\|=\|=\|\|\|\|
targets:	325	CCAUGUUUAAUUUCAGAGUGAA	346

coding gene

psRNATarget[Detail]

CV541482

ncRNA:	20	UACGGAUAAAAGUUUUACUU	1
		\|\|\|\|\|\|=*\|\|\|=\|\|\|\|\|\|\|\|
targets:	9	AUGCCUGGUUUUAAAAUGAA	28

homologue to UniRef100_A5JVZ7 Cluster: Superoxide dismutase; n=1; Glycine max|Rep: Superoxide dismutase - Glycine max (Soybean), partial (44%)

coding gene

psRNATarget[Detail]