Detail information of cpa-miR8141

Basic Info
Non-coding RNA IDcpa-miR8141
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length20
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR8141]

UCAGAUUAUUAAUGUUAAUGGUUCACGUGUAGCGGGGACCCCCUAUAGAUCCCCAUGGAUACUAGUAGGCUGGUU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR8141]

UGGAUACUAGUAGGCUGGUU

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX294296
 ncRNA:20UUGGUCGGAUGAUCAUAGGU1
   ||=|||=||=||*||||=|| 
 targets:390AAUCAGUCUGCUUGUAUUCA409
3similar to UniRef100_A7PE38 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)coding genepsRNATarget[Detail]
TC2293
 ncRNA:20UUGGUCGGAUGAUCAUAGGU1
   ||=|||=||=||*||||=|| 
 targets:777AAUCAGUCUGCUUGUAUUCA796
3similar to UniRef100_A7PE38 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%)coding genepsRNATarget[Detail]
 

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