Detail information of cpa-miR8137

Basic Info
Non-coding RNA IDcpa-miR8137
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR8137]

UUCGCCAGCCAUUCACAAAAUUUUUUUUUCGUUCCAAAGAAAAUUGUGUGAAUGGCUUGCGAAAG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR8137]

UUCGCCAGCCAUUCACAAAAU

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX257071
 ncRNA:21UAAAACACUUACCGACCGCUU1
   ||||*|||=||||||||*||| 
 targets:228AUUUGGUGGAUGGCUGGGGAA248
3similar to UniRef100_Q9C587 Cluster: Replication factor C large subunit-like protein; n=1; Arabidopsis thaliana|Rep: Replication factor C large subunit-like protein - Arabidopsis thaliana (Mouse-ear cress), partial (23%)coding genepsRNATarget[Detail]
EX260806
 ncRNA:21UAAAACACUUACCGACCGCUU1
   |||||*||||*||||||||== 
 targets:11AUUUUUUGAACGGCUGGCGGG31
3-coding genepsRNATarget[Detail]
EX282729
 ncRNA:21UAAAACACUUACCGACCGCUU1
   ||||*|||=||||||||*||| 
 targets:461AUUUGGUGGAUGGCUGGGGAA481
3similar to UniRef100_Q9C587 Cluster: Replication factor C large subunit-like protein; n=1; Arabidopsis thaliana|Rep: Replication factor C large subunit-like protein - Arabidopsis thaliana (Mouse-ear cress), partial (26%)coding genepsRNATarget[Detail]
 

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