Detail information of cpa-miR8136

Basic Info
Non-coding RNA IDcpa-miR8136
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR8136]

UAAAGUGGAAUUGGGAUAAUACCUUUCAAACUCCAUAAAAAUUAGUGGAAUUUGAAAUAUAUUAUCCAAAUUCCAUUUUGAA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR8136]

UAAAGUGGAAUUGGGAUAAUA

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX260750
 ncRNA:20UAAUAGGGUUAAGGUGAAAU1
   |||||*||*|||=||||||| 
 targets:265AUUAUACCCAUUUCACUUUA284
2.5similar to UniRef100_Q2SBN1 Cluster: Polysaccharide biosynthesis protein; n=1; Hahella chejuensis KCTC 2396|Rep: Polysaccharide biosynthesis protein - Hahella chejuensis (strain KCTC 2396), partial (5%)coding genepsRNATarget[Detail]
EX269037
 ncRNA:21AUAAUAGGGUUAAGGUGAAAU1
   ||||||||==|||=|==|||= 
 targets:786UAUUAUCCUGAUUUCGUUUUG806
3UniRef100_A9XM20 Cluster: Recombinase activating protein; n=1; Leptolalax liui|Rep: Recombinase activating protein - Leptolalax liui (Fujian Asian toad), partial (5%)coding genepsRNATarget[Detail]
EX271096
 ncRNA:21AUAAUAGGGUUAAGGUGAAAU1
   ||||||||==|||=|==|||= 
 targets:363UAUUAUCCUGAUUUCGUUUUG383
3UniRef100_A9XM20 Cluster: Recombinase activating protein; n=1; Leptolalax liui|Rep: Recombinase activating protein - Leptolalax liui (Fujian Asian toad), partial (5%)coding genepsRNATarget[Detail]
EX280605
 ncRNA:20UAAUAGGGUUAAGGUGAAAU1
   ||||||=*|||||*|||||| 
 targets:667AUUAUCUAAAUUCAACUUUA686
3homologue to UniRef100_A7NUB3 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)coding genepsRNATarget[Detail]
EX287966
 ncRNA:21AUAAUAGGGUUAAGGUGAAAU1
   |||*|||||||*||||||||* 
 targets:403UAUCAUCCCAAAUCCACUUUU423
3similar to UniRef100_UPI000034F36C Cluster: histidine triad family protein / HIT family protein; n=1; Arabidopsis thaliana|Rep: histidine triad family protein / HIT family protein - Arabidopsis thaliana, partial (10%)coding genepsRNATarget[Detail]
EX290969
 ncRNA:20UAAUAGGGUUAAGGUGAAAU1
   =|*||=|=|||||=|||||| 
 targets:651GUAAUUCUAAUUCUACUUUA670
3similar to UniRef100_A7QMT5 Cluster: Chromosome chr14 scaffold_128, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_128, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)coding genepsRNATarget[Detail]
TC815
 ncRNA:21AUAAUAGGGUUAAGGUGAAAU1
   ||||||||==|||=|==|||= 
 targets:855UAUUAUCCUGAUUUCGUUUUG875
3similar to UniRef100_A6TVD9 Cluster: Deoxyguanosine kinase; n=1; Alkaliphilus metalliredigens QYMF|Rep: Deoxyguanosine kinase - Alkaliphilus metalliredigens (strain QYMF), partial (7%)coding genepsRNATarget[Detail]