Detail information of cpa-miR477

Basic Info
Non-coding RNA IDcpa-miR477
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR477]

UCCCUCAAAGGCUUCCAGUAUUUCAGCCAAUUAUUACCAUACAUACAUAUGAAGUAAUGAAAAUGUGUAUGGAAAUAUUGGAGGACUUUGGGGGAGC

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR477]

AUUGGAGGACUUUGGGGGAGC

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
AM904225
 ncRNA:20GAGGGGGUUUCAGGAGGUUA1
   |||=|||||||||||=||=* 
 targets:303CUCUCCCAAAGUCCUUCAGG322
2.5similar to UniRef100_A7QM01 Cluster: Chromosome chr18 scaffold_122, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_122, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)coding genepsRNATarget[Detail]
EX268143
 ncRNA:20GAGGGGGUUUCAGGAGGUUA1
   |||||=|=||*||||||||* 
 targets:535CUCCCUCGAAUUCCUCCAAG554
3similar to UniRef100_Q6NKR3 Cluster: At3g55600; n=1; Arabidopsis thaliana|Rep: At3g55600 - Arabidopsis thaliana (Mouse-ear cress), partial (27%)coding genepsRNATarget[Detail]
EX269900
 ncRNA:20GAGGGGGUUUCAGGAGGUUA1
   ||||||*|||*||||||||* 
 targets:192CUCCCCGAAACUCCUCCAAG211
3similar to UniRef100_Q8VZH2 Cluster: AT4g33090/F4I10_20; n=2; Arabidopsis thaliana|Rep: AT4g33090/F4I10_20 - Arabidopsis thaliana (Mouse-ear cress), partial (33%)coding genepsRNATarget[Detail]
EX291275
 ncRNA:20GAGGGGGUUUCAGGAGGUUA1
   |||||||||=||*|||*||| 
 targets:338CUCCCCCAAGGUACUCAAAU357
3weakly similar to UniRef100_A9VAM4 Cluster: Predicted protein; n=1; Monosiga brevicollis MX1|Rep: Predicted protein - Monosiga brevicollis MX1, partial (3%)coding genepsRNATarget[Detail]
TC8724
 ncRNA:21CGAGGGGGUUUCAGGAGGUUA1
   ||||||||||||||*||||=* 
 targets:386GCUCCCCCAAAGUCGUCCAGC406
3similar to UniRef100_A7PC88 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)coding genepsRNATarget[Detail]
 

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