Detail information of cpa-miR395a

Basic Info
Non-coding RNA IDcpa-miR395a
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length20
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR395a]

GUUCCCUUAAACACUUCACUGGAUGUUAUCAUUCCACUGAAGUGUUUGGGGGAACUC

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR395a]

UGAAGUGUUUGGGGGAACUC

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
TC3589
 ncRNA:20CUCAAGGGGGUUUGUGAAGU1
   |||||||=||||||*||||| 
 targets:331GAGUUCCUCCAAACUCUUCA350
2similar to UniRef100_Q9ZNZ8 Cluster: ATP sulfurylase precursor; n=1; Brassica juncea|Rep: ATP sulfurylase precursor - Brassica juncea (Leaf mustard) (Indian mustard), partial (89%)coding genepsRNATarget[Detail]
 

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