Detail information of cpa-miR394b

Basic Info
Non-coding RNA IDcpa-miR394b
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length20
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR394b]

UUGGCAUUCUGUCCACCUCCACUGCGCAUCGACCAAUUCAAAAAAAAAAAAAAAAAAAAAAAGGUACAAGGAAAGGAGGUGGGCAUACUGUCAACA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR394b]

UUGGCAUUCUGUCCACCUCC

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX256366
 ncRNA:20CCUCCACCUGUCUUACGGUU1
   ||=||||||*||==||||=| 
 targets:175GGGGGUGGAAAGGGUGCCGA194
3similar to UniRef100_Q4JQH7 Cluster: NADH-ubiquinone oxidoreductase chain 5; n=1; Tetraodon nigroviridis|Rep: NADH-ubiquinone, partial (2%)coding genepsRNATarget[Detail]
EX299776
 ncRNA:20CCUCCACCUGUCUUACGGUU1
   ||||||*||||||||||||| 
 targets:316GGAGGUUGACAGAAUGCCAA335
1similar to UniRef100_A7QP47 Cluster: Chromosome chr1 scaffold_136, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_136, whole genome shotgun sequence - Vitis vinifera (Grape), partial (40%)coding genepsRNATarget[Detail]
TC4327
 ncRNA:20CCUCCACCUGUCUUACGGUU1
   ||||||||=||||=||*=|| 
 targets:33GGAGGUGGGCAGAGUGAUAA52
3similar to UniRef100_A7P0R8 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)coding genepsRNATarget[Detail]
 

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