Detail information of cpa-miR393

Basic Info
Non-coding RNA IDcpa-miR393
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length22
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR393]

UCCAAAGGGAUCGCAUUGAUCCUUUACAAGGUGAAAGCAAUCUAUAUAUAUAUAUGUGUGUGUGUGUAUAUAAGUCUGUCUCCUGUAUAUAUAGAGUUUAGGAUCAUGCUAUCCCUUUGGAUU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR393]

UCCAAAGGGAUCGCAUUGAUCC

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX268724
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:804GAAACAAUGCGAUCCCUUUGGA825
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (48%)coding genepsRNATarget[Detail]
EX295181
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:539GAAACAAUGCGAUCCCUUUGGA560
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)coding genepsRNATarget[Detail]
EX295682
 ncRNA:20UAGUUACGCUAGGGAAACCU1
   ||=|*||=|||==||||||| 
 targets:414AUUAUUGUGAUUUCUUUGGA433
3similar to UniRef100_A7QMJ1 Cluster: Chromosome chr19 scaffold_126, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_126, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)coding genepsRNATarget[Detail]
EX297612
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:470GAAACAAUGCGAUCCCUUUGGA491
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)coding genepsRNATarget[Detail]
EX299869
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:772GAAACAAUGCGAUCCCUUUGGA793
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (44%)coding genepsRNATarget[Detail]
TC2348
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:935GAAACAAUGCGAUCCCUUUGGA956
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (63%)coding genepsRNATarget[Detail]
TC265
 ncRNA:22CCUAGUUACGCUAGGGAAACCU1
   |*|*|||||||||||||||||| 
 targets:761GAAACAAUGCGAUCCCUUUGGA782
1similar to UniRef100_A7PA10 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)coding genepsRNATarget[Detail]
 

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