Detail information of cpa-miR160d

Basic Info
Non-coding RNA IDcpa-miR160d
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR160d]

UGCCUGGCUCCCUGAAUGCCAUCUAAGAAGCCUUGGCAAAGAGUGUUGGCAACCUUCUUACUUGGCAUGAGGGGAGUCAUGCAGG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR160d]

UGCCUGGCUCCCUGAAUGCCA

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX276016
 ncRNA:20CCGUAAGUCCCUCGGUCCGU1
   |*||||=|||||*||||||| 
 targets:487GUCAUUUAGGGACCCAGGCA506
2.5homologue to UniRef100_A7NZ87 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)coding genepsRNATarget[Detail]
TC5927
 ncRNA:21ACCGUAAGUCCCUCGGUCCGU1
   ||||||*|||||||||||||| 
 targets:480UGGCAUGCAGGGAGCCAGGCA500
1similar to UniRef100_A7NV55 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)coding genepsRNATarget[Detail]
 

Maintained by Administrator in Zhen Su's Lab | © 2013 China Agriculture University