Detail information of cpa-miR160c-3p

Basic Info
Non-coding RNA IDcpa-miR160c-3p
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR160c]

UGCCUGGCUCCCUGUAUGCCAUUUGCAGAGCCCACCGAGCAUCGCUGGCCUCCGUGGAUGGCGUAUGAGGAGCCAUGCAUA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR160c-3p]

GCGUAUGAGGAGCCAUGCAUA

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX290564
 ncRNA:20UACGUACCGAGGAGUAUGCG1
   |*||||||||=|||||||*| 
 targets:351AAGCAUGGCUUCUCAUACCC370
3weakly similar to UniRef100_A7PL12 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (32%)coding genepsRNATarget[Detail]
 

Maintained by Administrator in Zhen Su's Lab | © 2013 China Agriculture University