Detail information of cpa-miR160b

Basic Info
Non-coding RNA IDcpa-miR160b
SpeciesCarica papaya
classmiRNA
Chromosome
Start Site (precursors if it is microRNA)
End Site (precursors if it is microRNA)
Strand
Length21
Assembly
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[cpa-MIR160b]

UGCCUGGCUCCCUGUAUGCCACAAGCACAACCCGAUCUUUCCGAUGAUUGGCCGGUGCCGGUGGCGUGCGAGGAGCCAAGCAUG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR160b]

UGCCUGGCUCCCUGUAUGCCA

Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
EX258715
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:93AGCAUACAGGGAGCCGCGCA112
3-coding genepsRNATarget[Detail]
EX263304
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:153AGCAUACAGGGAGCCGCGCA172
3similar to UniRef100_A9VBT6 Cluster: Predicted protein; n=1; Monosiga brevicollis MX1|Rep: Predicted protein - Monosiga brevicollis MX1, partial (10%)coding genepsRNATarget[Detail]
EX265095
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:139AGCAUACAGGGAGCCGCGCA158
3weakly similar to UniRef100_Q1MST2 Cluster: PreC/core protein; n=1; Hepatitis B virus|Rep: PreC/core protein - Hepatitis B virus (HBV), partial (25%)coding genepsRNATarget[Detail]
EX298279
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   |*||||||||*|||==|||| 
 targets:187GACAUACAGGUAGCUGGGCA206
3-coding genepsRNATarget[Detail]
TC1820
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:336AGCAUACAGGGAGCCGCGCA355
3weakly similar to UniRef100_A7QVB9 Cluster: Chromosome chr2 scaffold_187, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_187, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)coding genepsRNATarget[Detail]
TC5927
 ncRNA:21ACCGUAUGUCCCUCGGUCCGU1
   ||||||=|||||||||||||| 
 targets:480UGGCAUGCAGGGAGCCAGGCA500
0.5similar to UniRef100_A7NV55 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)coding genepsRNATarget[Detail]
TC7685
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   ||||||=|||*|*||=|||| 
 targets:532GGCAUAUAGGAACCCGGGCA551
3weakly similar to UniRef100_A7P0R6 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%)coding genepsRNATarget[Detail]
TC8121
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   |||*||||*||||=||||=| 
 targets:621GGCUUACAAGGAGUCAGGUA640
3similar to UniRef100_A7PGE3 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)coding genepsRNATarget[Detail]
TC816
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:145AGCAUACAGGGAGCCGCGCA164
3similar to UniRef100_Q89Q87 Cluster: ABC transporter permease protein; n=1; Bradyrhizobium japonicum|Rep: ABC transporter permease protein - Bradyrhizobium japonicum, partial (5%)coding genepsRNATarget[Detail]
TC827
 ncRNA:20CCGUAUGUCCCUCGGUCCGU1
   *||||||||||||||=*||| 
 targets:184AGCAUACAGGGAGCCGCGCA203
3weakly similar to UniRef100_A7QVB9 Cluster: Chromosome chr2 scaffold_187, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_187, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)coding genepsRNATarget[Detail]
 

Maintained by Administrator in Zhen Su's Lab | © 2013 China Agriculture University