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Detail information of cpa-miR159a

Basic Info

Non-coding RNA ID

cpa-miR159a

Species

Carica papaya

class

miRNA

Chromosome

Start Site (precursors if it is microRNA)

End Site (precursors if it is microRNA)

Strand

Length

Assembly

Annotation

Source Gene Model

Reference

PMID: "24275495"

miRBase: annotating high confidence microRNAs using deep sequencing data

Kozomara, A. and Griffiths-Jones, S.

Nucleic acids research, 42, D68-73.(2014)

Sequence and structure Info

Stem-loop sequence[cpa-MIR159a]

GAGCUCCUUGAAGUCCAAUAGAGGAUUUUGCAGGGUUGAUUGAGCUGCCGAGCUAUGGAUUCCACAGCCCUACCCGAAGUUAUACUUUUUCUGGGUAGGCUUGCGGUUUGCAUAUCUCAGGAGCUGCAUUACCCUAAGCUUAAUCCUUGUUUGGAUUGAAGGGAGCUCUAG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[cpa-miR159a]

UUUGGAUUGAAGGGAGCUCUA

Targets Info

target name

Alignment

Expection

Target Description

Target type

Method

EX289378

ncRNA:	21	AUCUCGAGGGAAGUUAGGUUU	1
		\|=\|=\|\|*\|\|=\|\|=\|\|\|\|\|\|\|\|
targets:	599	UGGGGCCCCUUUUAAUCCAAA	619

coding gene

psRNATarget[Detail]

EX302494

ncRNA:	21	AUCUCGAGGGAAGUUAGGUUU	1
		\|\|*\|\|=\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:	459	UAUAGUUUUCUUCAAUCCAAA	479

2.5

similar to UniRef100_Q8GTR1 Cluster: Geranylgeranyl diphosphate synthase; n=1; Citrus unshiu|Rep: Geranylgeranyl diphosphate synthase - Citrus unshiu (Satsuma orange), partial (14%)

coding gene

psRNATarget[Detail]