Framework of GraP

Brief: GraP was developed under the LAMP environment, with analysis of data sources from public databases, including genome sequences from Phytozome and deep sequencing data sets from SRA.

Detail: Based on the genome assemblies from Phytozome, the results of gene family classifications, protein-protein interaction (PPI) network, gene co-expression network and microRNAs are well integrated and a database was constructed under the LAMP environment. Meanwhile, plantGSEA was employed as a web tool for functional analysis of gene batches. Search queries in different forms are permitted and various devices, such as GBrowse and GBrowse_syn, are offered to facilitate the usage of information in GraP.

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