Tool suite :: Gene Family :: Ubiquitin Proteasome System


Based on the resources from plant UPS and UUCD databases, GraP found 1749 genes which code for proteins of UPS, including E1, E2 and E3 adaptors and deubiquitination enzymes (DUB) and reconfirmed relevant domains of these peptides according to a HMMER search of Pfam databases (version 26.0). The confidence of these predictions is further supported by the function descriptions or family classifications of Arabidopsis best hits from TAIR.

E1 - Ubiquitin-activating Enzymes

E1

E2 - Ubiquitin-conjugating Enzymes

UBCATG

E3 - Ubiquitin Ligases

U-boxHECTRINGUBR boxN domain

E3 Adaptors

F-boxCullinDWDBTBDDB1SKP1
SOCS

DUB - Deubiquitinating Enzymes

USPULPOTUJAMMJosephinUCH